So this conversion has been completed for about a month now but I have also coated her in bedliner, and been fighting doctors getting the wife back on disability so I'm sorry for my delayed completion of this post and for not being around.
So anyway here we go.....
2 days before the swap my little auto started pouring cherry juice out the seal (guess she knew I was trading her out and wanted some revenge) so I kept topping her off until D-day.
Pulling the Auto is fairly easy (DO NOT SEPERATE THE TRANS AND XFER FOR REMOVAL) minus making sure everything is unhooked, some of the cables are not visible from the bottom or side of the trans they're on top, however if you pull your shifter and interior stuff first you'll be able to reach them better (reach not see). The mounting bolt that hold the auto to the motor above the starter is also a pain in the neck if you don't have small hands/forearms.
Now for the surprisingly easy part, installing your new 5 spd. First install the manual flywheel and clutch pack, just bolt it right up there (check to make sure the flywheel clears the oil pan, mine was a little flared due to someone over tightening the pan bolts just tap it with a block of wood and a hammer till its straight again, don't be scared just don't knock the hell out of it) make sure you use a clutch alignment tool just to save the headache later. Stab the trans and start your two bottom mounting bolts once you've got it sitting flush to the engine. Set the support brace in but do not bolt it up yet its just there to support the weight till you get the trans all mounted and tightened up and the starter back in place. Then bolt up the brace and the mounting bracket.
For some really good news.... you do not need any new driveshafts the one from the auto is the exact same as the one from the manual I chose to keep the one from the auto due to the donor coming from where the roads are salted heavily. What to do with the neutral safety switch? Well simply cut the plug off and wire them together (I went a little overboard, I soldered, heat shrink, liquid tape, more heat shrink, tape, and heat wrapped mine) now the ECM will think its in neutral and not care about any thing else. There is one plug on the manual, I don't remember which one it was for, that you will have to cut the pig tail off and fabricate your own and I want to say it was the reverse lights, simply get some spade connectors and insulate them very well to prevent shorting.
As for some not so good news.... Your going to have to alter the hole in the floor of your former automatic, the shifter for the manual is about 2" to the right and about 2" forward from being centered. Again don't be scared simply cut the floor plating with a die grinder or cutters 1" to the right and 1" to the front and everything will clear. What about the inner shift boot and the excessively huge new hole in your floor? Well the solution to that is pretty much your own depending on how "pretty" or factory you want/need it to appear. Personally, its under the console, I bolted some flashing down to the hole and mounted the console brace, sat the inner boot on top of it all and silicone it down just to block the little air hole, you could weld in some metal, tap some holes and do it right though I just didn't have the ambition at this point.
You are going to need the clutch pedal AND the brake pedal from the donor car! easiest way to tackle this, take the whole bracket and swap them out, or the whole steering column choice is yours I went with just the bracket because I forgot to get the keys to the donor column, either way pretty easy and self explanatory. If you keep your automatic steering column do not forget to "rig" or fix the interlock in the ignition, you can remove it (looked like kind of a pain in the neck to me so a zip tie and bam it's forever out of the way.
Don't forget that you can fill the xfer case from the shifter when you start putting fluid in, unfortunately the trans will not take it the same way you have to fill it from the fill hole. Is there an easy way? Not really easiest method is to get a hose run it up next to the engine and spend 20 min filling it up, sorry.
If there's anything I've missed (which I'm sure there is) feel free to ask and I'll respond as soon as possible.
P.S. I'll be posting this pic else where as well but I can not stress enough to check you wiring harness once you've got your auto trans out of the way. I can't speak about other years but as for a 95 they did not put a mounting or strap for the harness anywhere around the trans so it spent its whole life sitting there rubbing, sure got lucky I did the swap when I did and caught it before it became a huge issue.